Blast - Basic Local Alignment Search Tool is a NCBI Bioinformatics Resources. The program finds similarities between nucleotide or protein sequences; and it determines the statistical significance of matches by comparing nucleotide or protein sequences to sequences in a database.
BLAST P RESULT REVIEW AT1G66680.1 PROTEIN CONSERVED DOMAIN AND ITS HOMOLOGS IN OTHERS SPECIES
CONSERVED DOMAIN
AT1G66680.1 protein contains conserved domain AdoMet_MTases superfamily. The approximate position of the conserved domain is between 172-278 residue, and E-Value is 4.19e-10
RELATED HOMOLOGS
BLAST 's result shows the gene AT1G66680 has no related homolog with animal, bacteria, and fungi species. The gene has similar sequences with these species of plant Arabidopsis Lyrata, Arabidopsis Suecica, Arabidopsis Arenosa, Camelina Sativa, and Capsella Rubella. All of the match organism have the E value of 0 and high score between 739-704.
These organisms below have small e value which indicated the similarity of sequence results to gene AT1G66680.1.
- Eudicot species Capsicum Annuum
- Monocot species - Musa Troglodytarum
- Mosses species - Physcomitrium patens
- Algae species- Chlamydomonas reinhardtii
Four tools were used to analyze the gene AT1G66680
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Protein sequence comparison between gene and other species. |
Visual representation for cDNAs, T-DNA, and splice variants. |
Visual representation of gene expression for gene AT1G66680 within the Arabidopsis plant. |
Graphic of genes correlated with AT1G66680 and their expression in plant tissues.
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